NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10039698

Scaffold Ga0214917_10039698


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10039698 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3362
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007359Metagenome / Metatranscriptome352Y
F010746Metagenome / Metatranscriptome299Y
F016115Metagenome / Metatranscriptome249Y
F020860Metagenome / Metatranscriptome221N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1003969811F010746N/AMQTYYCSVSGEALSPERVEALQVLGIPESLWTKKEYSQTKKLRAVYAGDDGSNDIVICDKVDGGSLFDNEVIAEVE
Ga0214917_1003969812F016115AGGAGLKILEESFTSRGFKLQQIKRDGDVAIYKKQLDDGESENYHYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWGYTCTTIEDANKRFDDLQKKLNDYVATAILPSGEKRGRGRPRKIDLTKTEASV
Ga0214917_1003969813F020860N/AMNITKVKKLAEGGYALYSIDPKTKQETQVGYLGENLDPKGWLPEGVKVENS
Ga0214917_100396983F007359AGGAGMQLVKQNLGSHWVIGIKGKPMEIEQFHNRIYNWGGTNGELHWMSDSFAYFWITLEKLERCMFKYVMNSVSEKIGSRLKGKKGGLKNYVLNRVQNTINSIPVDNFFRTKEEQDFYSIGTISAEKLDEDS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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