NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10042951

Scaffold Ga0214917_10042951


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10042951 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3171
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015080Metagenome / Metatranscriptome257Y
F016800Metagenome / Metatranscriptome244Y
F058096Metagenome / Metatranscriptome135Y
F084145Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100429513F084145N/AMFLSCPVSFDLIDAEWYQDVDDAKEDALDWSVELSGEKVIVYQALEGEDGEYEFQKLCAVCA
Ga0214917_100429515F058096N/AMNRNLSVDECKVLWVVGAAERLATLGMLSPDIPLRLSSDAVDNFIQIDNHRDILFKSDFEVASIFNELAESENAEEVAPEDMRQIVHLILEYKNNRTQLVKYALSHQTV
Ga0214917_100429517F015080N/AMFDLLNFQPHGIPNAIQATHKFENDWKISVVAGPPGCGLYGNINENTYEVGIFRPNGNLTEDVSGWNTKEEVSAMMWVLSQL
Ga0214917_100429518F016800AGGAMLDAFTDYPIPSYGDIGGEKAPIRKATILTYDRNKYCDVLVYQVDEDGDLRGTVVNFKQFYLYKNEASYDDGIQFTDEELKTLPWTEVSYPHSI
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Institute for Fundamental Biomedical Research
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