NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214917_10050176

Scaffold Ga0214917_10050176


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10050176 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2833
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019469Metagenome229Y
F020665Metagenome / Metatranscriptome222Y
F021063Metagenome / Metatranscriptome220N
F022371Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100501765F020665AGGAGGMKRKTRDIKLVKVEEFKAAKIVVEVEDELFEAMAHAGRKHIAKDKVACFSYALNKALLELCEEVK
Ga0214917_100501766F022371GAGMLCLLELKDIVWVIGWFILYSWLILSAIYCAGYIILKLIDFIKEEFEL
Ga0214917_100501767F021063GGTGGVRSTHLCRGDYDDRLQQLAGEVALQAIRDLRLLRKRGMVKGMKIIKDHQGVPLNDALEYKNSHEVQKLLRDFKTGVVSWWCRASGVRIDNRTLLRKLNENDYALPT
Ga0214917_100501768F019469N/AAFDEGAYLDRKPEMVKLAGAFGGVIEPQFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWEIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLAGQIKEDEAKLVGLGR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.