NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10078000

Scaffold Ga0214917_10078000


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10078000 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2041
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002009Metagenome / Metatranscriptome604Y
F003304Metagenome494N
F021063Metagenome / Metatranscriptome220N
F033721Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100780004F021063GGAGVRSTQLCHGNYDERLQQLAGEVALQAIRDLRMLRKRGMVKGMKIVKDHTDVPLNDALEYKNSHEVQKLLRDFKNGTVAWWCRASGVRIDNRTLLRRMQDDYAVLF
Ga0214917_100780005F003304GAGMKQALVTQCFGDDWNKIIGLTRPRMEDYCKRHGCDFILIDKPLTDPMQYSKSAIGNIMATKGYDQVTFVDADVLIATDCPKLSDDAGVFCAFDEGAYLDRKPDMAKLAGTFGGMIEPKFYVNTGVFVIHSKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTDLDPSFNCMTSVESHFGLDRHKDAMIIHYAGQSNDLTKLADQIKSDDAKLAELGR
Ga0214917_100780006F033721AGGAMRWIKKELDEDGKPEWAVYIDVVGEGREEDLDHFDTYPTRDEAVKACWKYTWEDYDKRDK
Ga0214917_100780007F002009AGGAMTPPTIQEMGNAAQEIVWRVMGKGSDKSGYGDWLEKDKPTHDYHIARAVRHLATAQMQLHKSTPCPDNNGETSVDHLERALVRTLFVLAQIKKEVPRL
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Institute for Fundamental Biomedical Research
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