NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10086566

Scaffold Ga0214917_10086566


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10086566 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1888
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003112Metagenome / Metatranscriptome506N
F039992Metagenome / Metatranscriptome162N
F086661Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100865662F039992GGAGGVSLDEVYDLKDRVASVSERLARMEERQITLISMLERSLSNFGDLSNRVNAIEGLKTKMLLVAGALGAIISIAWDFVKSKLINGG
Ga0214917_100865663F003112AGGAMCKKIATWLTNFSLRFLMTQKEYACFKEALKFAVENNNMVKETKYIGKVKHLLSVNRSIKRIVEDGRDRDEVVDAVVHLAVALKYLEGRGRES
Ga0214917_100865664F086661N/AMKTAVFNTDGEFLHFDDPRSLEEAKTESINRIRHSASSSITDCGIDEVAQQNAALGIYTPERCEAIKSYISACRNEYLRCKALILASQTNDEADGVHFIAPQVPKGI
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