NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10093610

Scaffold Ga0214917_10093610


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10093610 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1780
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F078427Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100936102F078427GGAGLEYNVPLLQASSGLRNLMTASKGGVMKESLVAQISAYVYYNVQVISKLTSNAAFKNKFKEVIFNQIEKEFGEYVDSQARIKPKSLHHVYEWNQTGDKSARLFKLNKLNTEGLGFSMTYEFLPSKTFAKSEGNRRHVFVNKASVMEAGMPLKIAPRHSKRLVFETNGYKVFMPIGASVTVRRPGGTGVKNSFMMTYSRFFRSNLVNLAIKRSGFQQLFNRSMTKALNLPSEIKTVKYSFNPNTISIQADAALTSAFGASL
Ga0214917_100936103F000258GGAGMTVNYKLDAMLELRKYLWAKLKAAGIFDESIYWSDNVGENIVPILPVQQYPEMNQFLSGKKHIIYDKIGVSYDTLWLICNEQILFTVYSTDVSEINEIRNFMIDEFRRMDDAAKDMNRHPGFNSDKFKIHTIYVADMSPTAPSEELQGFFSADIILEIKYSRNTDSSGRYL
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