NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10138925

Scaffold Ga0214917_10138925


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10138925 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1311
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019099Metagenome231Y
F023293Metagenome210Y
F052465Metagenome / Metatranscriptome142Y
F057197Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_101389252F023293GGAGGMRYGILDDEGNVVRWVWHMPPYPHIVQKIKRQHKPKLDLSNVPEALF
Ga0214917_101389253F019099GGAGGLIINGRIIKDWDKSQISTAYQRPNQFRVITWDMGRVQSWLLGKQPLARTLLEKVIR
Ga0214917_101389255F052465GGAMVLEMLNHEKATEGRASILRRIHQRYNVLRVSRERIELLQQAKQP
Ga0214917_101389256F057197AGGMTDFGAWRYENLVQFAKESTERMNLLNAEIEALNDDLKAAINAYRDLLRRDSLGFLKATHPAEAEKTGE
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