NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10194753

Scaffold Ga0214917_10194753


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10194753 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1007
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019469Metagenome229Y
F020665Metagenome / Metatranscriptome222Y
F021063Metagenome / Metatranscriptome220N
F022371Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_101947531F019469N/AGGVIEPKFYVNTGVFVVHTKAVGVLSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLTKLANQIQADEAKLVELGR
Ga0214917_101947532F021063GGAGVRSTQLCRGDYDDRVQQLAGEVALQAIRDLRMLRKRGMVKGMKIIKDHTGVPLNDALEYKNSHEVQKLLRDFKTGVVSWWCRASGVQIDNRTLLRKLKENDNALPS
Ga0214917_101947533F022371AGGAMLCLVEIADIAWVIGWFVLYSSMTLSAIYCALYIIFKLIDYIRKELDL
Ga0214917_101947534F020665AGGAMRKRKAGKHIKLLKVEEYDAVKITVNVDDDLYEAMAEAGRQHIVKDKKACFEYALSQALLELSKEIK
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