NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222622_10022554

Scaffold Ga0222622_10022554


Overview

Basic Information
Taxon OID3300022756 Open in IMG/M
Scaffold IDGa0222622_10022554 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3231
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9201Long. (o)-106.9487Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000116Metagenome2132Y
F005849Metagenome388Y

Sequences

Protein IDFamilyRBSSequence
Ga0222622_100225541F000116N/AVRQIRPPPVSQHLREFAGNTHAWAVLGRNLIPVVGIYVFGWSMALAVFNYWFDGLVALVAIITAMVPRAVRESQGKPEIAGQSPVRKVATNVVGAVITWVVLLVVVGLPYWIVLIPLHDLLLGKELRRALAESPLLWLTFGSLASGHFWKAFRAGYDTMPDPELKQRVRWDTYLLILRAVAMFFMAGQGLGFFIVPLMA
Ga0222622_100225543F005849N/AGQQSADIAQMQASTYSELGRVKEDLKALLEPQDAVGQTRKEAFIKDVAERLYIINAERDEVVDVGPNGEKIVSEAIRRLSQLPTVGVPRLVTLRYTDIGGSEEDVRESKGGVRDPAYAHGIVVKMGAQDGFAFFDHFEELLFDRVGVPPRNVAANVEQLRQDTQDRIDDTIFEMNKFVVDKNPMVGLAWKDISDAVQAKFKDVPEPARTKQMEDLTKQTYYVYIFLSLYARMDGLRSRGVLSPNDDMIVTWKRSWLPNLMRSELGRWMLDNNLMEYYSDTMVKELRDAAGPAAASATPQTSRQMQ
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