NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222673_1024116

Scaffold Ga0222673_1024116


Overview

Basic Information
Taxon OID3300022821 Open in IMG/M
Scaffold IDGa0222673_1024116 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #801
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)851
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037979Metagenome167Y
F082215Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0222673_10241162F082215AGAAGGMNVFLGDTITLVRNETYVTGAVSGVVLDKNKQLERIYIEGLTAPFWLADNWKFLETEEEEEEE
Ga0222673_10241163F037979N/AMSYLFLGLDGEMSSSELSEGGKLIQIGVSTAECRTRSWTMNPGECQWSEQAFAVHGITRRRLSSSPSPAEVDAQLYEFLIAIGADANNRGKTIPVGFNVGAFDMPFVKDSLPKSYSLFSQRTVDLNALCFALDYKEENGMPVKAETWKKRAKAYAIKQIGAEN
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Institute for Fundamental Biomedical Research
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