NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222646_100014

Scaffold Ga0222646_100014


Overview

Basic Information
Taxon OID3300022822 Open in IMG/M
Scaffold IDGa0222646_100014 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #293
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)110086
Total Scaffold Genes165 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)119 (72.12%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002502Metagenome / Metatranscriptome553Y
F029288Metagenome / Metatranscriptome189Y
F037979Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0222646_1000141F002502GGAMSNATLTVGSQFTTAKSGVTGVIQEVIQNKNGTSRVRLDVSGQPRWTTVK
Ga0222646_100014139F037979AGGAGMSFLFIGLDGEMSSSELAEGGKLIQIGLSTEDGYQISMNMNPGECQWSERAFEVHGITLESLQSAPLPDEVDSQVYDWLIAVGVDTNSRGKTIPVGFNVGAFDMPFVKDSLPKSYSLFSRRTVDLNALCFALDYKEENGMPVKSATWKKRAKAYAIEKIGMENQHDAGWDSLMHIYCFEFLKGAMR
Ga0222646_1000148F029288N/AMSKLGRYNEARRKVESQALFYNILKNPHLVAQVDKYKGSRQSNNYKAIKESRSDD
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