NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222646_100042

Scaffold Ga0222646_100042


Overview

Basic Information
Taxon OID3300022822 Open in IMG/M
Scaffold IDGa0222646_100042 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #293
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)51575
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011759Metagenome / Metatranscriptome287Y
F052951Metagenome / Metatranscriptome142Y
F076076Metagenome / Metatranscriptome118Y
F086659Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0222646_10004221F052951GGAMKANEFIFEDDEELYTETAKMVWGVGKHTARGGTTKLKFRCSSGPRKSRQVSHPSKCHQPMDMAQAQKMKTTRARTAPQAARRTQRTKSINTASVLANRLNTNKPKQPKPYR
Ga0222646_1000424F011759GGAGMKEDLITDIWTIVIEHIPEKARKDVAADFVNALLDHGIKESVLESLMGVDPYLDQAIEYAVDGEEIEEQDEEDYED
Ga0222646_10004243F086659AGGAMPTVFRHALVTEIGTVPQDLVTIDAGVRATVIGCNLANITDYDTVVADLQVVGADTTVSYYIRGLVIPPNTSVKVITQGEKLILPSTTGLRLVCDTPDSIDATVSYVEIS
Ga0222646_1000429F076076GGAGMADLYGTTAGGTAVNVDANARRVLGDGAAGVGPYTSFGTPTLTAIKIVSATINFTTTPTVANSNMSKALTGLQSRAEIYYAGKPTASGANQFVALIHSEDTGDGYGASTSFDGSYENLEDAIGAALGVAENDITITEVALTGLSFA
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