NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222646_100122

Scaffold Ga0222646_100122


Overview

Basic Information
Taxon OID3300022822 Open in IMG/M
Scaffold IDGa0222646_100122 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #293
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27695
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (77.08%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022997Metagenome212N
F059682Metagenome133N
F061580Metagenome131N
F087930Metagenome110N
F091440Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0222646_10012222F059682N/AMQSIESKRSQKAHNEGLARELVYSYKWQAEKAPQWFRGVMDNLAKKYGQKYADDIRALMTLEKNRK
Ga0222646_10012224F061580AGGAGMSAEKEIRRTNAWLQRRVRASQVPVDARPYIDYQYQSPQLWRNVLIKCSIVAAILFATGLVTYGLITLNLWLAI
Ga0222646_10012227F022997AGGAGMAKLIDFPIGLDAGETRLDLDPDAVLTGAVGMLKEVVIVGYEADGSLYFASTRANAPDVLWLLKQAEQRLLAIEREMRK
Ga0222646_10012243F087930AGGMIYNTGKVKIGLHYTPPVRPADIGRDMMLLQTALLAKPKTAWQRIARWLEIDL
Ga0222646_10012245F091440GGAGMSFWLPVAFICLTSGNCGFANGKLTATASQCEATNYAVRQKLATDLDVASFKLVCIEIKKDEFI
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