NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222646_100141

Scaffold Ga0222646_100141


Overview

Basic Information
Taxon OID3300022822 Open in IMG/M
Scaffold IDGa0222646_100141 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #293
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24270
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (65.79%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009397Metagenome / Metatranscriptome318Y
F011368Metagenome291Y
F027841Metagenome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0222646_10014119F027841AGGAGMAKRPEEEIKEIELAENETFISDDDIDVEVVVTEDTNEVFVKFSGFADSEDAEEYAQFLAETLPLLLFETTRIQ
Ga0222646_10014132F009397GGAMEQQYLIVKARSATGQTVKNQELDGSRFTLAQRAIAQQVADQLAAKMTARTGVQWTGFLETYTPSVRRSS
Ga0222646_10014136F011368N/AMYTLTHKDIAGVALTVGDHCIVTEHNRIILARILQLYANSNNVQLQPLSSTAGGRRPKPAQAAIRRECYNVFRIADQEITMSILRGAV
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