Basic Information | |
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Taxon OID | 3300022822 Open in IMG/M |
Scaffold ID | Ga0222646_100657 Open in IMG/M |
Source Dataset Name | Saline water microbial communities from Ace Lake, Antarctica - #293 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9545 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Ace Lake | |||||||
Coordinates | Lat. (o) | -68.4725 | Long. (o) | 78.188 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F017336 | Metagenome / Metatranscriptome | 241 | N |
F024964 | Metagenome | 203 | Y |
F065935 | Metagenome | 127 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0222646_10065712 | F017336 | AGG | MTRACVISHKSPMEANYGLLCAMCYDGLRSALQGAPNALQHLREIYVMRSPMELDTPKPLKKDPPAPFNLDAWQLAEDMWQALTGGYIPVKWNHIQVYGKAKEVCQALHQDIDNLVNRKEVIYLMPLVKTLGQALYRYPLEEKSRTTLLPCPSCNLKTVYSPPSEFGDDLQVKCHSCGFVIPPEKMAFYANLAERERV |
Ga0222646_10065718 | F024964 | AGG | MTDMRDISDKILWTKGRETGIEVERERISKMAEARICFDFQGSGKCDHSVCYGMAELIITIREAQVG |
Ga0222646_10065719 | F065935 | GAGG | LADESNDSNKLYWTLGYEAGIELERERIIRVFQAREANRTIMEALEYPYTAQELEATIREGQDD |
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