Scaffold Ga0222646_102689

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0222646_102689

Scaffold Ga0222646_102689

Overview

Basic Information
Taxon OID	3300022822 Open in IMG/M
Scaffold ID	Ga0222646_102689 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Ace Lake, Antarctica - #293
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3629
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (10.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Ace Lake
Coordinates	Lat. (^o)	-68.4725	Long. (^o)	78.188	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011526	Metagenome / Metatranscriptome	290	Y
F057689	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222646_10268910	F011526	GGA	MIATVQCFIHHRTGKQVRIAPVKPQHLFLLTKAYENCKGFFIKH
Ga0222646_1026895	F057689	N/A	MKNKKFTVNERIVLLEKMTYKLALEVQAIVSAIKKTKEEI

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