NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222646_104553

Scaffold Ga0222646_104553


Overview

Basic Information
Taxon OID3300022822 Open in IMG/M
Scaffold IDGa0222646_104553 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #293
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2423
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008481Metagenome332Y
F017102Metagenome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0222646_1045531F008481N/AMDIEVKIDADCVSTEYETILFVKSLMDYKFVERLQFIKSTYRFARADFIILNTENIKSIIVECKSFKQIPSFLNKSKVDALLKHYKDPFIVIKHETAYYWLRVNAIDWSLLPIINEELAYEVSGCLSNDYDELGNQLLIGLLYP
Ga0222646_1045533F017102N/AMYQQPLCPPVHSRDKKQPFTKNRQAEVQASYYLRRGWFQNKKRMLFKLLGLEAKQYAHIETMTELDAFSKQYLMDNYHLEIPIRQTLFLMKCVK
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