NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222646_106644

Scaffold Ga0222646_106644


Overview

Basic Information
Taxon OID3300022822 Open in IMG/M
Scaffold IDGa0222646_106644 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #293
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1799
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011140Metagenome294Y
F023282Metagenome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0222646_1066441F023282N/AFAGCANYLCMDCLIKLIEINKADMVSYNCPCCREEIIKNSNENFTDFCYREIEISRQIVSLLEKEISTKKKINLGEAWTLFEATIMDIETNDIE
Ga0222646_1066442F011140N/AMYIYQMNSFLIYMRNQNLSEKTIAEHSRGLVKFQNLGGNLKADENEIIQFIKENYNEGSQQKIITSTISKYRHYKGKTTETIRDFLRLTNSESALLQQKKNVILKENLPEIDFKKILNDYYRNKDYKSFVILYLLMNYNTRNKDLVVKVVNDETNLNDDENFLFIREKDVVYIRNDYKTKERYGTKRNIIKAKKFFNAVQEVDSLLIDNNNLDRQVKKVTGGLNQSTLFKMLITKNNNLKSIAKASKARGTNMETIATSYDIT
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