NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222646_109134

Scaffold Ga0222646_109134


Overview

Basic Information
Taxon OID3300022822 Open in IMG/M
Scaffold IDGa0222646_109134 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #293
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1404
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087884Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0222646_1091341F087884N/ATNLVKKGTENIMLYKLTVGQYQLLNEIDEDLSMIEQNIYAVSAIKGITYEEASRIKMVDFSKLVEGLSDFNVRLLEKVRINNSITLGGVKYHIEHKPDKLSSGQLLDVLNIRSKNQGKAVEVMDLLLAAMCKPKGKHYGDDGIGLNERAALIRDAKLSEVWNVFVFFWNLWNNYLDNTEDSLTKWMEETPKKVQEILDNDGHSSQ

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