NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222646_112519

Scaffold Ga0222646_112519


Overview

Basic Information
Taxon OID3300022822 Open in IMG/M
Scaffold IDGa0222646_112519 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #293
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1092
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002594Metagenome / Metatranscriptome545Y
F011527Metagenome290Y
F024421Metagenome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0222646_1125192F011527N/AMLVYFQFWRCGYYAKGLVESDNLDSASKALWAEHVGTFKWEDQTKDQPENANYLTIEEYKYERSSDGKTEPKDEARSQVG
Ga0222646_1125193F024421AGGAGMSEALMEKLNQKMKLEAKWASELLSNGAVTVEMVNISKEVKTVEREIKEVVEHK
Ga0222646_1125194F002594N/AMAKIPISRLNSAPEKYAANEFNQLIEDLQDMVKILNSTYPKDVNDERERQVWLLGG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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