NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222654_1023512

Scaffold Ga0222654_1023512


Overview

Basic Information
Taxon OID3300022836 Open in IMG/M
Scaffold IDGa0222654_1023512 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #421
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1190
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018181Metagenome / Metatranscriptome236N
F024650Metagenome / Metatranscriptome205Y
F037238Metagenome / Metatranscriptome168N

Sequences

Protein IDFamilyRBSSequence
Ga0222654_10235121F018181GGAGMKAQNQFVKVNASFYKKMEHLEDIVEDAVKEELISIAQSAVSFSPVDTGAYVTSFSFTTGAGRPRGKSSDNKPKKQNPQQKMQEGFQNLLTDINKIDLKSTASVQLRNGSPHASDVENGGPTWRRAGYKVFAQVRNIYG
Ga0222654_10235122F037238AGGAGMSFRSFDMLNLIRDFGETLTLRKVTTAGDYNPATGAIDNSATTDYSITAYLYNYNAGVIAGNDEVVRGTRKCVISALGLAAVPDFDDLIVGSGDTVKIKSVMSLFSAGTAVGYICDVGE
Ga0222654_10235123F024650N/AVDQQVQNEEITFALGENGNNVYYSGAWVARVIASKYSRQVTTQISGALSADYSDLAKQYKTLADNLEYQGKTAGASVGVLAGGITKSTVEAVRANTNRIEGSFRRDRFKNPPSYQTPEYE
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