NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222711_1000069

Scaffold Ga0222711_1000069


Overview

Basic Information
Taxon OID3300022837 Open in IMG/M
Scaffold IDGa0222711_1000069 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1699
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32138
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005194Metagenome / Metatranscriptome409N
F009788Metagenome / Metatranscriptome313Y
F087884Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0222711_100006923F005194N/AMEGIASEHPQINTVLKGNIFDIDLTKTPSGSYLIYDVANISPNGFNGIDYSIDMFLCDNVTELNTESNEVTVQNECSLIALDIMSIFENFNKASWSDKDLHVVLNKTWSIQPFTERFDSLYSGASINMSLSTSYGYARCKIPVRN
Ga0222711_100006926F009788N/AMWWAFFNSKMDIIEKNTTNYIYCNISNEVVDPYYTMTIKSSEYTVDVTLAAPSSVNDRYVSFTLIEGIQDLANATIALPNNGDYPYSIINATTPGGTTGIVIQRGILRLKQESEVVYSYTDTQETIIYE
Ga0222711_100006940F087884GGAMLYKLTVGQYQLLNEIDEDLSMIEQNIYAVSAIKGITYEEASRIKMVDFSKLVEGLSDFNVRLLEKVRINNSITLGGVKYHIEHKPDKLSSGQLLDVLNIRSKNQGKAVEVMDLLLAAMCKPKGKHYGDDGIGLNERAALIRDAKLSEVWNVFVFFWNLWNNYLDNTEDSLTKWMEETPKKVQEILDNDGHSSQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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