NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222711_1000090

Scaffold Ga0222711_1000090


Overview

Basic Information
Taxon OID3300022837 Open in IMG/M
Scaffold IDGa0222711_1000090 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1699
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29479
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (70.31%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000060Metagenome / Metatranscriptome2944Y
F003677Metagenome / Metatranscriptome474Y
F011522Metagenome / Metatranscriptome290Y
F028035Metagenome / Metatranscriptome193N
F042572Metagenome / Metatranscriptome158Y
F046634Metagenome151Y
F050676Metagenome / Metatranscriptome145N
F080522Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0222711_100009023F011522N/AMSNHQIKLFRAIINQAIHDAMYDGVYKYHIIDKREAIQWLTSDSIDFRTICSYAEIDASQATRKFTEAMKLDLYALRDDQNLVLNKPRKKYKHKGKFRLTFNE
Ga0222711_10000904F000060AGAAGMASKLNTEFNYRYQVIGDTPWEKIKTLQGFLEGRIRAAALEEVGDLKDQAKVAKLKHLEENGGLQHEILELKAEILEGISHQPAAKESFELNQKEIKILEKLLEELYVIAEPTRIAGYSDEEMFEANAANEFTVNIGREIQAEMIANGRPSPAKLRNAMSNPYTWNALKGIGLIPKETKILEGNINPRDKIKLIGVEDEVI
Ga0222711_100009041F003677N/AVGLSPYRKVVMIDESLCLFHNDVDKKVYEIEYEVTYVTKWQVIGEDQNEAMNKWLEEHKLDLSTEDGKDCVCSYAKDYTQISKVQEIAKIKYNEEDDEVYADET
Ga0222711_100009043F050676AGGAGGMQTKLPVKSRVADKYKPMLTYYAELIGLCHETVAETQSLKMLDPMGKKTTATSLFIRVCQRMDKSIDAKEIADKLENVSKINQQKEIA
Ga0222711_100009048F042572AGGAGGMNRRLIVYKVQYRLNSDPWNRDKFIKTKRIIMTPDEVNQTDGYWRNHSRVSKKFFDQMETHESNEQGRYSIWSIKKA
Ga0222711_100009050F046634AGGAGMTTQQTFIPYAESKSAEDRIAYVKANPGKYMPKAQYDLIKGLNAKIDALDSKMNEILAKK
Ga0222711_100009051F028035AGGAGGMITYEMLQQVEGDTDKHSNYQLNQYEFPFPENSVLIERDKEMNRILNKPIIITTSNNNNC
Ga0222711_100009061F080522AGGMIIGGDKGFGKTPKKKPSVFKKAAKTIVKKGIKFAVSPLTLGITAGTILYKGGKAKSFKYSNVRQFDKRGRKIT
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