NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222711_1000330

Scaffold Ga0222711_1000330


Overview

Basic Information
Taxon OID3300022837 Open in IMG/M
Scaffold IDGa0222711_1000330 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1699
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14562
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004748Metagenome / Metatranscriptome425Y
F019230Metagenome231Y

Sequences

Protein IDFamilyRBSSequence
Ga0222711_100033024F004748N/AMFIETLKTMRLYKRESKLGTMHNYHRKNLIYVFKCDACSETFMRPKSKVDPGRASNDYKHVCSGCDYKKFAQAVGVKMRKVYQLDASSTKTL
Ga0222711_10003305F019230N/AMNFTMVMLVCFTVEVCTALFDDTRFNSHDACYEYSRSVVSYMQEMYPDSAGEIRCLTGEEMAIYKEYIDQGGKPQLTNPESPEPSTDI

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