NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222711_1000643

Scaffold Ga0222711_1000643


Overview

Basic Information
Taxon OID3300022837 Open in IMG/M
Scaffold IDGa0222711_1000643 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1699
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9679
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030247Metagenome / Metatranscriptome186Y
F045372Metagenome153N
F090887Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0222711_100064311F030247AGGLLYGLAMKNTNSPIHKEVNRFMWIIKGHLVPNGHSEKDYEEIHKSYLHRIWGNHEAPIHEEGFEEAYKEKYE
Ga0222711_100064314F045372N/AMFTFVLLIYLGIDRELIEYEMVFDNIEHCNYYAKEVVRRYSTHGIALEDRAVAYCVPKRFGVED
Ga0222711_10006436F090887GGAGGMGGKSTNPNRLKYKVYRVVNVKTGKVSRLAGVGMELPHEVLRNLPLGCEWAGKIKGGDTMRYERIL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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