Scaffold Ga0222711

Basic Information
Taxon OID	3300022837 Open in IMG/M
Scaffold ID	Ga0222711_1000852 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Ace Lake, Antarctica - #1699
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022837 Open in IMG/M

Scaffold ID

Ga0222711_1000852 Open in IMG/M

Source Dataset Name

Saline water microbial communities from Ace Lake, Antarctica - #1699

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8318
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (76.47%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

8318

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (76.47%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Ace Lake
Coordinates	Lat. (^o)	-68.4725	Long. (^o)	78.188	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Ace Lake

Coordinates

Lat. (^o)

-68.4725

Long. (^o)

78.188

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003224	Metagenome / Metatranscriptome	499	N
F006056	Metagenome	382	N
F009733	Metagenome	313	N
F010818	Metagenome / Metatranscriptome	298	Y
F023240	Metagenome	211	N
F037978	Metagenome	167	N
F070640	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222711_100085211	F037978	N/A	MGQRQGGRALEPNTPRVLNAAYYLFDLDHLGIDGQAFIVIRDGKPTLAYRRFSRDRWSPEIMPNTPE
Ga0222711_100085212	F003224	AGG	MTYSLFDSIGDIQLDRPGHNCTGQLCTYCERFDREDVQVLAEIDKNWRIQATIFRKSLAIGGLFSADLLIDAIGLPDGHPNQIGALFRSWASMGVITSMGNYVVSTRESNNGRSIRMWKRTA
Ga0222711_100085213	F023240	AGGTGG	MGDYLEGYVQALTNVLDDIEVEKCETVADVRRMIRQMLDDTDSE
Ga0222711_100085216	F070640	AGGA	MTHEPIHYSKYDSHCGLAGCGCDHARCYKGWIDNTTGTWPCLYCREDLTGRLMRAQQAREKGYPQESVSRILMTKTR
Ga0222711_10008522	F006056	N/A	MTLQITLGGSVIDLGLFDYSLAVAHGRSDVTANPTASNAQLVLRGDTGPLLDLADTVAISFDGVDRFTGAISDLNVSFISTGTPTAITTITAMGNLAKLGYTDVGALGYIEQTARQRVTDILDATGLDYLNAGDPDITLYAILEADAQPTTALDALSRIAQGTGATYYDDPTGRIIFEDYGNRGSTTFAGIWANQVGTWSEAEGTWADYPLFPTSFNLEAPGVIFAPTWAKTLTPLINDVTVTYGPDESVTQTDSASITQYGRREYRLDTDIKTIDDATTRAAGIMTAQANGLWNLGQISVLVDQLDETDTTALLELVSGDLVTVRGLPASGPYPDFNGIVEGWTDSYNNGQHIMTLSISDPRFSLQVLQWGQVAPAFTWGEVGPGAQWFEIITQSDLVRL
Ga0222711_10008525	F009733	GGA	MSKIDQELHVDTVEVEPKKKPTSSKHPKLATETERARAIVRAKLKG
Ga0222711_10008526	F010818	AGG	MDFTDVVGLVATSLAALAIMGTGLVWLIRNVVRDEIKKATLTIQPGFRNGGESLADVAAKVDRISEKLGL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222711_1000852

Overview

Ecosystem & Geography

Associated Families

Sequences