NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222711_1002406

Scaffold Ga0222711_1002406


Overview

Basic Information
Taxon OID3300022837 Open in IMG/M
Scaffold IDGa0222711_1002406 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1699
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4283
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020855Metagenome221N
F068214Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0222711_10024063F068214N/AMTVKLVPQTSSVIPPGKFIYTDETFLIQPPKYIQGEAFPQQGKALVPAHFSYGHHNPDFTPIYTPPTQLAMNYNTYIYNSVTGYT
Ga0222711_10024064F020855GGAMSKDIVMYQLDTPYSSQILFLNSENSIFKNIDGEGSYQYDFQTPIQLPTNCQMLISITDAQMPNIIPNVSSSNNTISFSIPTFSKLFTITIREDDGITDRVYNVQEWLAVVNEKITYEAVSQFSLYGGFNTSTSKITWYCNYPFQILSNVEYPTTCFDLIGFKKNRFNEVVYESEGVLLSSVINPSYHITMPSCVNFSGTRFIFVKFKNISVNNMNSRGVTDQAVVRIDNNAPFGFMIFYRPIEVHRFIINRQTINNISFTLTDTQGKELNIFSNDAQITIKLEYMYKPNIRSMEEGTINYELRKLSKVLTDKPSIAGSYNPETNQFIRE
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