NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222711_1005289

Scaffold Ga0222711_1005289


Overview

Basic Information
Taxon OID3300022837 Open in IMG/M
Scaffold IDGa0222711_1005289 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1699
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2450
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003224Metagenome / Metatranscriptome499N
F010818Metagenome / Metatranscriptome298Y
F075753Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0222711_10052891F010818N/ATVDFGDIVGLIATALAALAIMGTGLVWLIRNVVRDEIKKATLTIQPGFRNGGESLADVAAKVDRISEKLGLS
Ga0222711_10052896F003224AGGMTYSLFDSIGDIQLDRPGHNCTGQLCTYCERFDREDVQVLAEIDKSWRIQATIFRKSLAIGGLFSADLLIEAIGLPDGHPNQIGALFRSWSSMGVITSMGNFVVSTRESNNGRSIRMWKRTA
Ga0222711_10052897F075753AGGTGGVSDYIDAYLDALHVVLTEIAVEKPDSVEAVCHLIWHMID
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