NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222711_1005781

Scaffold Ga0222711_1005781


Overview

Basic Information
Taxon OID3300022837 Open in IMG/M
Scaffold IDGa0222711_1005781 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1699
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2310
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006056Metagenome382N
F009733Metagenome313N
F017930Metagenome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0222711_10057811F006056N/AMTLEITLAGSVIDLDLFEFNVTVAHGRSDVTSSPTASNTQIVLRGDTGPLLELADTVAISFDNVDRFTGAISDLNVSFISTGTPTAITTITAMGNLAKLGYTDVGASGYIEQSARQRVTGILDATGLDYLNAGDPDITLYAILEADAQPTTALDALARIAQGTGATYYDDPTGRIIFEDYGNRGSTTFPGIWANQVGTWSEAEGTWADYPLFPTSFNLEAPGVIFAPTWAKTLTPLINDVTVTYGPDLSVTQTDSASITQYGRREYRLDTDIKTIDDATTRAAGIMTAQANGLWNLGQISVLVDQLDETDTTALLELVSGDLVTVRGLPASGPYPDFNGIVEGWTDSYNNGQHIMTLSISDPRFSLQVLQWGQVAPAFTWAEVGAGAQWFEIVTQSDLVRL
Ga0222711_10057813F017930GGAGGMNLSLAIQHARPGEEWTLNGDTYDGLTWLSGTTKPTEKEIETAYPLAVAAKEAAEAERLATIQAARDHAKGLGFTDAMLAIMYPQLTEAPSE
Ga0222711_10057814F009733GGAGGVSEIDQELHVDTVEAEPVKKKPTSSKHPKVATETERARAIVRAKLKR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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