NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222632_1020760

Scaffold Ga0222632_1020760


Overview

Basic Information
Taxon OID3300022842 Open in IMG/M
Scaffold IDGa0222632_1020760 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #46
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1106
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002602Metagenome / Metatranscriptome544Y
F004614Metagenome431Y

Sequences

Protein IDFamilyRBSSequence
Ga0222632_10207602F004614N/AMKPSLHRFAQYTTHHEIDVDMDEEFWPMHGILLIIWGAWTGVVHFLDWLTVDAIIWWAEPLTIIPFLFLLLMKERFDSLNPLHWWPMVWGYKIKLPDTDRVTIYPINGEDLVKEHGGPQHIHIVDYEHIKFRRKRDAVMYALRNF
Ga0222632_10207603F002602AGGMKNADQIKALVVAIEEKDNNIRMLLAQQGNHEVQIAEYREIVRELSDKLKLYESKYGTVFKPARNS
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