NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222633_1011665

Scaffold Ga0222633_1011665


Overview

Basic Information
Taxon OID3300022847 Open in IMG/M
Scaffold IDGa0222633_1011665 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #48
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1711
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027378Metagenome194N
F036509Metagenome169N

Sequences

Protein IDFamilyRBSSequence
Ga0222633_10116651F027378N/AMSYVLDTAYSSQVIFLNSNNCNFKSIDGIGSYIYNLQTPIQKPTNTMMLLSITDAQIPNVSPNVTSSNNQISFYIPTFSKYFTITVGDSDGDAVYSADEFVNEVNEKILPNALEQFYLYGTY
Ga0222633_10116652F036509N/AMCFKYIMSLHQLTTKLTPQQSNYIPAGKFIYTDETFLIKPPIDTRGEAYPRQGKPLVEHGFSYAHHNPEFIYKTGGKPLAKNFNTLIYNKLTGYT
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