NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224531_1000678

Scaffold Ga0224531_1000678


Overview

Basic Information
Taxon OID3300022849 Open in IMG/M
Scaffold IDGa0224531_1000678 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16443
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004581Metagenome432Y
F014350Metagenome / Metatranscriptome263N
F039906Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0224531_100067812F014350N/AMATQVNPLEEHAARAKAGRRGSKAKEQQAVQTTPADTDFPYAGQEADPQQELDMLENQADAPVRGSYLREKDGYEALSPEQKAVCDKDFESYLDRLTRPIEAKEGETRQDAILRAKKEYCATRQEHTAHHREMAKTMLASKINCLNSEYPRNSFSLKNPDVAKEFLATAFYHNAAAAKGLTAFDKDVFAASKKAALREFSVLAASVETGGSATKEFNNTFALSIERPPIGAPSQNLRIAAEPLPEKRQELAAIFGKCAWYHSNQSGRTPEEREQRRAARTKTTQELER
Ga0224531_100067813F004581GGAGGMQHAEIYNGHAGRFQQMARHIELSMTPQHLQKHGGPDPITTNDITLATTLLNSVYGYPAGKQALLALSAGLLPGEERCQTVRGLFRMTAACSEYDQTLTYTLLPLPGREIETANLLKATAAYSIERAGAHSRQIPPSTRHPVQLER
Ga0224531_100067816F039906AGGMQIHSGSFRGTAVTAFAAFAIGVVAWSGHFFTLLGLLALPIVFKCAKGTPQRITRLACYYAGSIWPIMPGAAQFFGNEALLHPLSIVIL
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Institute for Fundamental Biomedical Research
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