NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224531_1007101

Scaffold Ga0224531_1007101


Overview

Basic Information
Taxon OID3300022849 Open in IMG/M
Scaffold IDGa0224531_1007101 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3349
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000109Metagenome / Metatranscriptome2202Y
F010440Metagenome303Y

Sequences

Protein IDFamilyRBSSequence
Ga0224531_10071013F010440AGGMTVAEAEEKLETLTRNLASSEISLSQRHKYEAQVARCHRFIQRARQKAHRSLASFAETLLGMAGDTVFDQNQNAALITAAHLIRCASIEQLAIAVPAAIRETPTNTTRPAGFKCPEFTETAECLLGIDNSTFSCECNVAIQTALQLSNIVGWQQIHQSVRRAQADSSELGPKGIVNRLTQICSAYHPKKPASTAQAPDSQKVTSLSTVPVSESHL
Ga0224531_10071014F000109AGGTGGMTTPKKAAIQTKRRVVAPAEKRTQIRLTVDSKFTKTHFTQLFAVLKIRNKNALAEHIIMNFKTKAAQAQLVAFFNGPWLNIPFQTIDTAFVFPLTHEIADELERVGGEILGGVNRSKTFRVMVAYFASIHKLKTPTQTFA
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