NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222653_1008541

Scaffold Ga0222653_1008541


Overview

Basic Information
Taxon OID3300022857 Open in IMG/M
Scaffold IDGa0222653_1008541 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #419
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2843
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002602Metagenome / Metatranscriptome544Y
F004614Metagenome431Y

Sequences

Protein IDFamilyRBSSequence
Ga0222653_10085413F004614N/AMKLSPHKFAQYRTHHEIDMDMDEEFWPMMGILFTIWGGWTGVVHFIDWLTVDAIAWYVEPWTIIPFLFLLVMSEKFDSLNPLHWWPMVWGYKIKLPDHERITIYPINGEDLVKEHGGPLHIHIVDYEHIKFRRKKDAVMYALRNF
Ga0222653_10085414F002602N/AQIKALAVAIEEKDNQIRMLMAQQGNHEVQIAEYRQIVKELSDKLELYESKYGTVFKSSRN

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