NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224528_1000010

Scaffold Ga0224528_1000010


Overview

Basic Information
Taxon OID3300022861 Open in IMG/M
Scaffold IDGa0224528_1000010 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)194681
Total Scaffold Genes146 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)117 (80.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061449Metagenome / Metatranscriptome131Y
F100183Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0224528_1000010123F061449GGAMFNLVAINLPDSHGKYAQDCHKERCPNPGRYQFYADIDEAGLPDWEGKAICSKHLVEEARHRPEIIMSLIDMLIDTLEQHRLFPQPPAPEPTGNRQVIHFHQP
Ga0224528_100001066F100183GGAGGMKRIAILFVFLVSAAALTQAQGHWSFKGTVTKMRMTDCVMQRGFMAAMSGVSAPVGNTCPEYTIIGDKVVYVVVGRRADEFIPLAEDMEFLIRKNELVTFSDDEKMKSHFAIQQMTLRADWEREETRKELAARMMERSVSYETRNPPHTSLVSNAR
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