NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224528_1000485

Scaffold Ga0224528_1000485


Overview

Basic Information
Taxon OID3300022861 Open in IMG/M
Scaffold IDGa0224528_1000485 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30401
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (86.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003389Metagenome489Y
F003764Metagenome469Y
F003942Metagenome460N
F006579Metagenome / Metatranscriptome369Y
F042119Metagenome158N

Sequences

Protein IDFamilyRBSSequence
Ga0224528_100048517F003764GAGMQILEDRPYAHDENPAALLAGAEIEAAHLYRSIKIVRLWNQSSALSRPRREEMVEAEQQLASLYAAILFEIGSAFGLRAADELKLQIEAACILEDWECKPAEQGLLFPIPSDPASAISQARARR
Ga0224528_100048518F042119AGAAGGMETIRKVNPARLAWGIFDHQQSDYVNEGDIPASYSGDSIAMGQPVRKPFRMDGEMWLTIALSSKEARAYRLCPLRIFTGSPTTYRDKTGTDEGAEAARKDPNGFYDRMTVKHGGQEFVLCGPEVQIVAGQPEDVPVPQVQLALF
Ga0224528_100048519F003942GGAMLGRRLNPTIHRYEDVELIEVHSEYLECSFMVARDEWESGKTLLTIFSPLDGNVLGFPHYRLHRNNIFAVGPRLPDGTTAQPGMAEAIEIERQAGHTIYADHLSAMLYGTGTNPARS
Ga0224528_100048520F003389GGAMQITVWSVAADDDNGTYASVHETEHTAYWRLIQLTVDADNKDDVAKAEAFMEVEDYEGLDAWIHKEVIEPLNTYSVNQHTLDVPASSGPAPADENKHITRRELASVLHGLRLMQEQWEPTMHGCSSISLHEPQELSEPNSCDHFCDEEDSPLNPTEIDELCERLNTEIRN
Ga0224528_100048522F006579AGGAGGMTPNDVSSTIPGNPNSILELMKLPAFQDLLAKVETNFYRNRPKEAADLELEGTIRFTLQERAAQAWEILAKARSTGLPMEQAQELISELVYPPLESDGN
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