NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224528_1001251

Scaffold Ga0224528_1001251


Overview

Basic Information
Taxon OID3300022861 Open in IMG/M
Scaffold IDGa0224528_1001251 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17181
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F003942Metagenome460N
F017951Metagenome / Metatranscriptome237N

Sequences

Protein IDFamilyRBSSequence
Ga0224528_100125115F003942GGAGMLGRRLNPTIHRYEDMELIEVHSEYLECSFLVAKDEWETGKKLLNIFSPINGNMLGFPHYRFHRDNISATGPKLPDGTTAQPGMAEAIEIQRQAGHAIYADHLSAMLYGTGLNPACS
Ga0224528_100125117F003764GAGMQIQLDSPYAHDENPAALLAGAEIEAAGLHRCLKIVRLWSQSSTLSRPRREEIIEEEQRIASLYAAVLQETGSAFGIEKADELKVRIEAACILDDWECPPAEQRLLFPIPNDSATEASPPTARK
Ga0224528_100125119F017951N/AFETAGLGIAPFRLVRVEMRWFSIPGIPGSKKPGSSCMFCGHPIAECCFLRDANGKEFHVGNECIKKAGDAGLYDTVRKELRRMKNQAEADAAAATFREGRDILARADVRASLSTQPHPNSFFAAKGKTMADYYEFLLHNSPRGTVANTVGKLREFAAESIQ
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