NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0224528_1002472

Scaffold Ga0224528_1002472


Overview

Basic Information
Taxon OID3300022861 Open in IMG/M
Scaffold IDGa0224528_1002472 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10404
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000109Metagenome / Metatranscriptome2202Y
F010440Metagenome303Y

Sequences

Protein IDFamilyRBSSequence
Ga0224528_10024722F000109AGGTGGMTPPKKAAIRTKRRIVAPLEKRTQLRLTIDSRFTKAHFNQLFAALGIRKKNALAEHIIMNFKTKVAQAQLVAFYNGPWLNIPFQAIDTAFVFPLTYEIADELERVGGEVLGGVNRSKAFRVMVAYFASIYKLKSPTYTTGA
Ga0224528_10024724F010440AGGMTVAEAEERIEALTRNLASSEISPAKRVMWEAQMARCYRIIQRARQQAHRSLASFAGTLLDMIGDTAFDQDHNTAIITAAHLIRGASIEQLAVAVPAAIRETPTCDTRPNRVKCPEFTEIVVCLLRLDSIPFSCERNIAIRTALHLSNIVGRPQIHQSVRRAQADTGGLGPKGMVNRLTEICSAYRPQKSGSSPCGSGSKKITSLSTPSTA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.