NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224528_1006994

Scaffold Ga0224528_1006994


Overview

Basic Information
Taxon OID3300022861 Open in IMG/M
Scaffold IDGa0224528_1006994 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4155
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023510Metagenome209N
F057061Metagenome / Metatranscriptome136N
F071899Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0224528_10069941F057061AGGAGMSNDKNLLSELIALSHSPIHNHLKEEDVKALRLEDEQTAEEFIYSDGEATEVEVPLWNHDSRMAFHILYDATDVEIITRVRRPYPGKPVLYQKDEHFMQHETRQVLDALMPEGARYGIVTFEASGKDGCKNMAETAKFLCRHGWTEGDERFRVVYADVNGTGTMVLVSASANVKRLKDLGVFISSDPKAPKRMRRTMAAHQSMLEAQIVSSYPAPTGQVTMAKLKNGRVISILNFNMKLLNDQETAFLDGSGVINLPGFDGCAATLVGPFGLGKGIYAANERMADYDIYLYGSKDEVVFHGDRIYIGLLLKTSKHELMTDLQTITNAGFFEEDLCVRYGLEVMDERAKILFGDDEDAITDYFATLVNVSDAARRDMD
Ga0224528_10069943F023510AGGVGLWYIEGRNHAGNMVKPIDPWPAPGPNSHIFFKVTAVNPNHYGIPPTTFIVEALNEEAAVECIKRAIWAGILLPHSYNGALNPWPTYFQSNALRYLLDGMFVAVELETLPTLRFFPDPFVRDEWLRYQLSWMARLVEDIQKWWDAMLARPFFTSWFGR
Ga0224528_10069948F071899GAGGMQARVKLTPRIIARLIVGKPVTVNLPAGTSSLSLVTEGKFHEFLRAFHAQEEFDPETSHTEVIGLFDLIFGKH
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