NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224526_1001702

Scaffold Ga0224526_1001702


Overview

Basic Information
Taxon OID3300022872 Open in IMG/M
Scaffold IDGa0224526_1001702 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7674
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F004301Metagenome / Metatranscriptome444Y
F017951Metagenome / Metatranscriptome237N
F042119Metagenome158N
F080768Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0224526_10017021F080768GGAGMLGHRLNPTIHRYEDVELIEVHSEHLECSFMVAKDEWETGKKLLNIFSPIDGNVLGF
Ga0224526_10017022F042119GAGMETIIREVNPARLAWGTFDHAKSDYMNEGDIPASYSGDSIAMGQPVRKPFRMDGEMWVAIGLSNDGARAYRLCPMRIFNGTPTNYRDKSGSAERAEEARNDPNGFYDRMTVKHGGQEFVLCGPEVKIVASQHEDVFVPQVQLALF
Ga0224526_10017023F003764GAGMQIQLDSPYAHDENPAALLTGAEIEAAGLHRCLKIVRLWSQSSTLPRLRRKEIIEEEQRLANLYAAILFEIGSAFGLRAADELKVRIETACILDDWECPPAEQGLLFPIPNYSATEANPAMAKK
Ga0224526_10017024F004301GGAGMTTMQFSLFDVRPAAATVGMEPSVNARNAKRQLDTLRKQLATAQADLEDVDYNLSIVAMHQRASREGKIDANWWDAAMRFGMLDPGEEPVYRLGSYPVKVLPWIRHLIFTLNAERRDVLSAIADIEPKVAALSQIIGNAIQ
Ga0224526_10017025F017951GGAGMAIAHKFETAGLGIAPFRLVRVEMRWFSIPGIPGSKKPGSSCMFCGHPIAECCFLHDANGKEFHVGNECIKKAGDAGLYDTVKKELRRMKNQAEADAAATTFREGRDILARADVRASLSTQPHPNSFFAAKGKTMADYYEFLLHNSPRGTVANTVGKLREFAAESFQ
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