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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022872 Open in IMG/M |
| Scaffold ID | Ga0224526_1002340 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6179 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Norrbotten County, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3529 | Long. (o) | 19.0475 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003389 | Metagenome | 489 | Y |
| F003764 | Metagenome | 469 | Y |
| F003942 | Metagenome | 460 | N |
| F004301 | Metagenome / Metatranscriptome | 444 | Y |
| F017951 | Metagenome / Metatranscriptome | 237 | N |
| F042119 | Metagenome | 158 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0224526_10023403 | F003389 | GGA | MQITVWSVAADDDNGTYASVHETERAAYRRLIQLTVDADSKDDVAKAEAFMEAEDFDGLDEWIHEEVIEPLNTYSVDQHKIDVPTISSSADDGKHITRRELASVLHGLRLMQEQWEPKMHGCTSIGLHHPLELSEPNSCDHFCDGEDSPLGPGEIDELCERLNMGFCN |
| Ga0224526_10023404 | F003942 | GGAG | MLGHRLNPTIHRYEEVELIEVHSEYLECSFMVAKDEWETGKKLLNIFSPIDGNVLGFPHYRLHRDNISATGPKLPDGTTAQPGMAEAIEMQRQAGHAIYADHLSAMLYGNGLNPARS |
| Ga0224526_10023405 | F042119 | GAG | METIIREVNPARLAWGTFNHAKSDYMNEGDIPASYSGDCIAMGQPVRKPFRMDGEMWVAIGLSNDSARAYRLCPMRIFNGIPTNYREKSGSAERAEEARNDPNGFYDRMTVKHGGQQFVLCGPEVQIVRSQHEDVSVPQVQLALF |
| Ga0224526_10023406 | F003764 | GAG | MQIQLDSPYIQDENPAALLAGAEIEAAGLHRCLKIVRLWSQSSALPQSRHDEMVEEEQRLANLYAATLFEIGSVFGLRAADELKVRIEAACVLEDWECPPAEQGLLFPIPNGPATKASPATARK |
| Ga0224526_10023407 | F004301 | GGAG | MTAMQFSLFDARSVAPTVGMEPSVNARNAKPQLDTLRKQLATAQADLEDVDYNLSIVAMHQRASREGKIDANWWDAAMRFGILDPGEEPVYRLGSYPVKVMRWIRHLIFTLNAERREVLTAIADLEPKVAALSQITGNAIQ |
| Ga0224526_10023408 | F017951 | GGAG | MAIAHKFETAGLGIAPFRLVRVEMRWFSIPGIPGSKKPGSSCMFCGHPIAECCFLRDANGKEFHVGNECIKKAGDAGLYDTVKKELRRMKNQAEADAAAATFREGRDILVRANVQASLSTQPHPNSFFAAKGKTMADYYEFLLHNSPRGTVANTVGKLREFAAESIQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |