NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224526_1050283

Scaffold Ga0224526_1050283


Overview

Basic Information
Taxon OID3300022872 Open in IMG/M
Scaffold IDGa0224526_1050283 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)820
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F075559Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0224526_10502832F003764GAGMQIQLDSPYVQDENPAALLAGAEIEAAGLHRCLKIVRLWGQSSTLPRLRHDEMIEEEQRLANLYAAILFEIGSAFGLRAADKLKVRIEAACILDDWECPPAEQGLLFPIPNDPTTEASPATARK
Ga0224526_10502833F075559GAGMETIREVNPARLAWGTFDHAKSDYMNEGDIPTSYSGDCIAMGQPVRKPFRMDGEIWLTIALSNDGARAYRLCPLRVFNGTPTNYRDKTG
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