NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224550_1000005

Scaffold Ga0224550_1000005


Overview

Basic Information
Taxon OID3300022873 Open in IMG/M
Scaffold IDGa0224550_1000005 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 P3 10-14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41344
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (70.73%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0472Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001829Metagenome / Metatranscriptome629Y
F087285Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0224550_100000538F001829GAGGMKRQFLHLSAYPCDECASPVIAGSLAVRENEISKETEIRQVGAICLSCGHRQNRATEPKRARHLPPVEWDPVVTIEAAHVTAAYAEALNRAELH
Ga0224550_100000541F087285AGGMLTKVIKWSAIAALLGGAAFRTTRAYALPLSVVVVAAAIVVLSQAASMRRYVWLILFLVVACLFNPVFPVPFSNYAFGIASTFAAFLFFFSLELLKPKIRV

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