NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222685_1001382

Scaffold Ga0222685_1001382


Overview

Basic Information
Taxon OID3300022874 Open in IMG/M
Scaffold IDGa0222685_1001382 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1077
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5904
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)24
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007072Metagenome358Y
F075727Metagenome118Y
F077915Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0222685_10013822F075727N/AMNKINKKGWVARDFIIAMLVFSGVMAMFVVMIASIADDYDNPDIINDEFSEKFDKFSEDTERAGEMWTATTSEGGLSLVGTADLLFFSTFKVISLVFTSVVSAGQQLAGFGEFFGIPTAISSIFMVLIFTILTVSIVFIIISSIRSGREL
Ga0222685_10013823F077915GGAGGMAVTDYYIQPTGNETGGLFEISKYVGLSATAGLFWPIMLLVIWVVSFLGFKQYSTSRAWTFASFFCSMLGIFLAVLNLMAPIWMYLSIFMMLIGLVWLKLEAN
Ga0222685_10013826F007072N/AMELSKLKKKGQLSLGDAPTVVLLVGLVFLVMATIAFIGEKYGNSIASQQTLTATCNNSLNGGTGSVYSGCGSAYNTTVDLQTEIANNTSIAGIVLTISLVGIVLTILIGVFIGVRGGTAR
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