NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222685_1034169

Scaffold Ga0222685_1034169


Overview

Basic Information
Taxon OID3300022874 Open in IMG/M
Scaffold IDGa0222685_1034169 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1077
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)977
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)24
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015411Metagenome255Y
F042291Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0222685_10341692F042291GAGGMPIYQAYNKRIKAWVKYHFTKKGFEVTDVKQRNPKKPFKGIKIKGKRK
Ga0222685_10341693F015411GAGGMPRAGYGKKDGSGKGRSEGGRGRNRTDNCRHPEKRK
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Institute for Fundamental Biomedical Research
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