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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022875 Open in IMG/M |
| Scaffold ID | Ga0224553_1000293 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 10-14 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 23370 |
| Total Scaffold Genes | 28 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (78.57%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Norrbotten County, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3532 | Long. (o) | 19.0474 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003389 | Metagenome | 489 | Y |
| F003764 | Metagenome | 469 | Y |
| F003942 | Metagenome | 460 | N |
| F004301 | Metagenome / Metatranscriptome | 444 | Y |
| F006579 | Metagenome / Metatranscriptome | 369 | Y |
| F017951 | Metagenome / Metatranscriptome | 237 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0224553_100029313 | F003389 | GGA | MQITVWSVAADDDNGTYASVHETELAAYRRLIELTVDADNKDEIAKAEAFMEAEDFDSLDEWIHEEVIEPLNTYSVDQHKLDVPTAPASADDGKHITRRELASVIHGLRLMQEQWEPKMHGCTSIGLHDPLELSEPNSCDHFCDEEDSPLSPTEIDDLCERLNMGLNN |
| Ga0224553_100029314 | F003942 | GGAG | MLGHRLNSTIHCYEDVELIEVHSEYLKCSFMVAKDEWEIGKKLLNIFSPIDGNVLGFPHYRLHRDNISATGPKLPDGTTVQPGMAEAIEIQRQAGHTIYADHLSAMLYGTGLNPARS |
| Ga0224553_100029316 | F003764 | GAG | MQIQIDSPYIQDENPAALLAGAEIEAAGLHRCLKIVRLWSQSSAVPRLRREEIIEEEQRLASLYAAILQETGSAFGIDKADELKVRIEAACILDDWECPPAEQGLLFPILNEPMTEASPATARK |
| Ga0224553_100029317 | F004301 | GGAG | MTAMQFSLFDARPTAATVGMEPSVNARNAKRQLDTLRKQLATAQADLEDVDYNLSIVVMHQRASREGKIDANWWDAAMRFGMLDPGEEPVYRIGSYPVKVMRWIRHLIFTLNAERRDVLSAIADLEPKVAALSQIIGNAIQ |
| Ga0224553_100029318 | F017951 | GGAG | MAIAHKFETAGLGIAPFRLVRVEMRWFSIPGIPGSKKPGSSCMFCGHPIAECCFLRDANGKEFHVGNECIKKAGDVGLYDTVKKELRRMKNQAEADAAAATFREGRDILARADVRASLSTQPHPNSFFAAKGKTMADYYEFLLHNSPRGTVANTVGNLREFAAESIQ |
| Ga0224553_10002932 | F006579 | AGGAGG | MTPNNASSTIPGNPDSILELMELPAFQNLLAKVETNFYRNRPKEAAELELEGTIRFTLQERAAQAWEILAKARSTGLPMEQAQELISELVYPPLESDGN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |