NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224553_1021993

Scaffold Ga0224553_1021993


Overview

Basic Information
Taxon OID3300022875 Open in IMG/M
Scaffold IDGa0224553_1021993 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S2 10-14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1601
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0474Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003389Metagenome489Y
F003942Metagenome460N
F062360Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0224553_10219931F003389GGAMQITVWSVAADDDNGTYASVHETESAVYRRLIQLTVDADNKDDVAKAEAFMEAEDFDGLDEWIHEEVIEPLNTYSVDQHKIDVPTALASADDGKHITRRELASFLHGLRLMQEQWEPKMHGCTSIGLHDPLELSEPNSCDHFCDEED
Ga0224553_10219932F003942GGAGMLGHRLNPTIHRYEDVELIEVHSEYLECSFMVAKDEWETGKTLLNIFSPIDGNVLGFPHYRLHRDNISATGPKLPDGTTAQPGMAEAIETQRQAGHAIYADHLSAILYGTGPNPARS
Ga0224553_10219934F062360N/AGGLHRCLKIVRLWSQSNALPQSRHDEMIEEEQRLAKLYAAILFEIGSAFGLRAADVLKVRIEAACILEDWECPPAEQGLLFPNPNDPTTGASPATARK
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