NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0224553_1028109

Scaffold Ga0224553_1028109


Overview

Basic Information
Taxon OID3300022875 Open in IMG/M
Scaffold IDGa0224553_1028109 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S2 10-14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1351
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0474Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012741Metagenome277Y
F069592Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0224553_10281092F012741AGGAGGMLTPQSRNLLGVLSLTNSAGGIFQSLKRQTAAAGFIAYCGIISAVLGLWIWLWRDTTFEDKTLTRTVGAALVLSSFFFFQHLRRGFGTFFLILTSTGIGITVHYSNHPLIHGDRPEIPAIVLIAIGLIAYFAQTRYVAGFLFFLAASVTIIAFLWFNSALFCPIVMVIAGGILIFLGMMIRSLAMFNSFM
Ga0224553_10281093F069592AGGMNHNHRSQTVLSPLFTQNLVQRLEQLNKVDQFTDSSNLALPFALFQLCQINLSVTTSIEAVALLGGRSLPRCGRAASSATHPSGKVTPQRPHSD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.