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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022881 Open in IMG/M |
| Scaffold ID | Ga0224545_1000650 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7391 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (78.57%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Norrbotten County, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3533 | Long. (o) | 19.0471 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001643 | Metagenome / Metatranscriptome | 659 | Y |
| F020070 | Metagenome | 226 | Y |
| F048483 | Metagenome | 148 | Y |
| F061167 | Metagenome / Metatranscriptome | 132 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0224545_100065011 | F061167 | GAGG | VVTTTKGADALALMRRQSFDALVMDFTQETVDIINFTTKACGLQPSLAVFLADEWGDELATGLEELSHVLTMLEDDELARLKVESRTA |
| Ga0224545_10006504 | F001643 | GGAG | MLGESMNFPTDTLIDMLYIILAGEVAISASDAGEIEQIQRELQRRGGEQCWSFQTVN |
| Ga0224545_10006505 | F020070 | GGTGG | MPASNTYVRSASVALPSADGCRASSVVAFGCVLLLIGAYCFCPSVFAQTSDSPTAEEPTNSWTATTDLKSDDLIPERIPVRIIESHSQNANRTLDKRSVEIRGTDGHFEPYQAVERETLTVDASTVRTTLRTFARDVNGMKALVQVTEEEKHILPGDDSNIVRVTYNPDVNGRLQPVQREIVETKKIGKDLEETNTTVMLPSVNGGLAPAFKTHELRKRAANHTVETEKTTWLPDGNGRWQLSETRQNITTEEAKDRRIEERVFRPDAEGKLGQISRVVSQESESTSGEKRSVVETYSIDVPGTTQDGSLHLVERKTSTRSSSSTGERATEQKVEQTNPGDPGPGLRLSVLVDGRIVPGPAGEQSTVTIRARDSNGNLGIVSVDTTKADRIPTIQVQQTPAEKP |
| Ga0224545_10006506 | F048483 | AGGAGG | MCSPMLTVQAAPTNASFVQACCDIPPVHEKYEAEFIPLHMNWVLVDDTKGNPRAQMRWVVDR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |