NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224545_1002436

Scaffold Ga0224545_1002436


Overview

Basic Information
Taxon OID3300022881 Open in IMG/M
Scaffold IDGa0224545_1002436 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3387
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3533Long. (o)19.0471Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012243Metagenome / Metatranscriptome282Y
F016839Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0224545_10024363F016839GGAGGMFSIIFTWLIVVWGVLACVYMLHCAWTRFPRRYVDDVIPFLYPVDISLAESLLDPAAEFECRWTLGPLQFREAQRKRIRLFLEVTRRMAHNAKVLVEYAHSHSEKNGDDPHRSSLASELQERAIGVRLYSLLIGVKLRFWLVFHGEIFNAMPVLSHLRTAGEIDGLQTYSALKAAAAAFVQLPPEEVNSLTRNL
Ga0224545_10024364F012243N/AMNLVLRYIPLGLLVLLLGILLRRRAYITCPWFFVYAVFGVIAGLARFVAHSYPTRYYATYWVTEAGYDLLGILVMYEVLRAVLGNLARAWWARLVFPMILLAGIGMGWARTDVVPARFSGIEFYMVVGEIAVRFVQVIVFAGLVTLVPLLGLRWRQYPFGVATGFGLYATVMLLTTTKFSDFGTRFKLLWGWTSIVAYSLAVLIWMWFFSVPQEIETLNTEQSAPSPGDLKQYKDALRRM
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